Bingo Integrates chemistry into databases
Bingo
Solution Overview
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Benefits
Flexibility & Scalability of a True Data Cartridge
The data can be accessed by any SQL-compliant application
Bingo Supports a Large Database Operation
It is successfully operating on the PubChem database
Fully Relational Registration System
Insert, delete and update records in a relational structure
Features
Ability to search in a variety of ways:
- Supports molecular searches in 2D and 3D exact and substructure searches, as well as SMARTS searches
- Supports similarity, tautomer, Markush, formula, molecular weight and flexmatch searches
- Supports Canonical SMILES, with isomeric information included
- Supports reaction substructure search (RSS) with the optional automatic generation of atom-to-atom mapping
- Search techniques available through extensions to the SQL syntax
Multiple search/data formats supported:
- A chemistry column in a table being searched can contain Molfile (V2000 or V3000) or SMILES data. Similarly, the query can be in Molfile or SMILES format
- For reactions, Rxnfile or reaction SMILES formats are supported for both target and query structures
Fragment highlighting is supported for substructure, tautomer and reaction substructure searches
Questions & Answers
We are trying to use Bingo NoSQL. Installation procedure says: Bingo NoSQL is distributed as Indigo Toolkit plugin. Look at the Downloads page for package suitable for your system. However, the Downloads page has no dedicated info about Bingo NoSQL.
Posted on May 2, 2024 by Markus
Bingo NoSQL is distributed as an Indigo Toolkit. E.g. for Python one needs to import the Bingo module from indigo.bingo import Bingo.
Please use this page to download the latest version (or use install from the package) https://lifescience.opensource.epam.com/download/indigo.html
Please see this usage example https://github.com/epam/Indigo/blob/master/api/python/tests/test_bingo_nosql.py
Can I use Bingo in my commercial product?
Posted on November 12, 2020 by Dana Hayes
Bingo version 1.0.0 was released under GNU General Public License v3.0
Bingo version 1.9.0 was re-licensed under Apache License, Version 2.
The Apache License v2.0 allows Bingo to be used as a component in proprietary software products. If the Apache License v2.0 does not fit your needs, please contact us to discuss the purchase of a commercial license.
If you need support licensing for the products, or there are any additional features required, EPAM can provide a standard support contract. Price depends on the support requirements and will be defined within an SOW document.
Posted on November 15, 2020 by SolutionsHub Support
I'd like to try Bingo, how can I install and test it?
Posted on November 1, 2020 by Marion Garner
To begin, review technical characteristics, such as the list of the supported platforms: Windows/Linux/Mac; 32-bit and 64-bit. There is also a list of the supported database systems: Oracle, Microsoft SQL Server, PostgreSQL, and NoSql(LuceneSOLR, Sinequa). Having said that, there were no problems with large databases like PubChem (> 40M entries). If it meets the requirements, please fill the Request Solution form and our specialist will send you detailed instructions on how to install and set up Bingo.
Posted on November 3, 2020 by SolutionsHub Support
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Tech Requirements
- OS: Linux (all modern distributions 32 and 64bit), Windows 2000/XP/2003/Vista/2008 (32-bit and 64-bit), Max OS 10.6+
- Oracle 9+, PostgreSQL 9.0+, Microsoft SQL Server 2005+
Version
Updated on Oct 15, 2019
Documentation
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