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New Genome Browser (NGB) Genomic data formats analyzer

(44 ratings)

Open Source

New Genome Browser (NGB)

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Overview

Benefits

Features

Reviews

Overview

Benefits

Features

Reviews

Solution Overview

New Genome Browser (NGB) is a free web-based genome browser available under a GNU LGPL open source license. It is primarily designed to support researchers who wish to explore their own data sets, but also has integrations with many popular public sources (NCBI, Ensembl, UniProt, etc). Integrated genome browser NGB can utilize many types of data in a variety of common genomic data formats, including BAM/CRAM, GFF/GTF, VCF (including structural ones), bigwig and bed/seg files.NGB supports real-time interaction of genome resolution at all scales and can show data in multiple genomic regions simultaneously. An integrated plug-in is provided for browsing 3D structures of proteins.The browser provides its own API and can be integrated with data processing pipelines. NGB supports Chrome, Safari, Firefox and other web browsers on all leading platforms (Windows, Mac, Linux) and uses a server back-end for data manipulation.

Benefits

Improved Analysis

Researchers benefit from a rich intuitive interface and fast data visualization

Start Fast & Free of Charge

Get quick outcomes with the easy-to-integrate tool available under MIT license

Full Web & Cloud Support

Use as a cloud-based solution with no installation required on your machine

Enhanced Teamwork

Collaborate and share research results for greater synergy

Enrich Analysis with External Data

Get public science data needed for analysis at your fingertips

Features

Alignments visualization

BAM/CRAM format is supported
Responsive visualization up to 150 kb
Sorting, coloring & grouping reads
Soft-clipped reads
Coverage visualization

Variations visualization

Quick filtering/search, grouped/stacked variations view
Detailed variation info on demand
Links to external databases (dbSNP, etc.)
Viewing variation effect on protein domains

Visualization of structural variations (long insertions & deletions, inversions, breakpoints)

Detailed variation info
Displaying fusion proteins with domains/exons structure
Visualization of the DNA rearrangement and the resulting hybrid proteins/domains/exons
Integration with UniProt database and display of protein domain structure on rearrangement scheme
Split-view mode to see multiple genomic regions simultaneously

RNASeq-specific visualization

Split reads and spice junctions modes
Exon-only mode to hide introns
Integration with ENSEMBL, UniPROT, etc.
REST API integration (e.g. in pipelines)

Customer Ratings & Reviews

4.7

Based on 44 votes

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Most recent reviews

July 12, 2022

Thanks to New Genome Browser I do my research in a much smoother way now. A rich intuitive interface, fast data visualization, and easy access to public data are some of my favourite features.

Author: Catalina Holmes

April 27, 2022

Our research team really benefited from collaborating and sharing research features. It enhanced our teamwork. It's also great that we could use it as a cloud-based solution.

Author: Elliott Bird

1 user found this review helpful